recipe bioconductor-ebsea

Exon Based Strategy for Expression Analysis of genes

Homepage

https://bioconductor.org/packages/3.12/bioc/html/EBSEA.html

License

GPL-2

Recipe

/bioconductor-ebsea/meta.yaml

Links

biotools: ebsea, doi: 10.1038/nmeth.3252

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

package bioconductor-ebsea

Versions

1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends

• bioconductor-deseq2 >=1.30.0,<1.31.0

• bioconductor-empiricalbrownsmethod >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ebsea

and update with:

conda update bioconductor-ebsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ebsea:<tag>

(see bioconductor-ebsea/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ebsea/README.html)