recipe bioconductor-ebsea

Exon Based Strategy for Expression Analysis of genes

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/EBSEA.html

License:

GPL-2

Recipe:

/bioconductor-ebsea/meta.yaml

Links:

biotools: ebsea, doi: 10.1038/nmeth.3252

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

package bioconductor-ebsea

Versions:

1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0, 

1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends:

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-empiricalbrownsmethod >=1.26.0,<1.27.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ebsea

and update with:

conda update bioconductor-ebsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ebsea:<tag>

(see bioconductor-ebsea/tags for valid values for <tag>)

Download stats

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