recipe bioconductor-ebsea

Exon Based Strategy for Expression Analysis of genes

Homepage

https://bioconductor.org/packages/3.10/bioc/html/EBSEA.html

License

GPL-2

Recipe

/bioconductor-ebsea/meta.yaml

Links

biotools: ebsea, doi: 10.1038/nmeth.3252

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

package bioconductor-ebsea

Versions

1.14.0-0, 1.12.0-1, 1.12.0-0, 1.10.0-0, 1.8.0-0, 1.6.0-0

Depends

• bioconductor-edger >=3.28.0,<3.29.0

• bioconductor-limma >=3.42.0,<3.43.0

• r-base >=3.6,<3.7.0a0

• r-plyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ebsea

and update with:

conda update bioconductor-ebsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ebsea:<tag>

(see bioconductor-ebsea/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ebsea/README.html)