Package Recipe 'bioconductor-edger'

recipe bioconductor-edger¶

Differential expression analysis of RNA-seq expression profiles with biological replication. Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that produce counts, including ChIP-seq, Bisulfite-seq, SAGE and CAGE.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/edgeR.html
License: GPL (>=2)
Recipe: /bioconductor-edger/meta.yaml
Links: biotools: edger

package bioconductor-edger¶

Versions: 3.26.0-0, 3.24.3-0, 3.24.1-0, 3.22.5-0, 3.20.7-0, 3.20.1-0, 3.20.0-0, 3.18.1-0, 3.16.5-0, 3.14.0-1, 3.14.0-0, 3.12.1-1, 3.12.1-0, 3.12.0-0, 3.10.5-0
Depends bioconductor-limma: >=3.40.0,<3.41.0
Depends libgcc-ng: >=7.3.0
Depends libstdcxx-ng: >=7.3.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-locfit
Depends r-rcpp
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-edger

and update with:

conda update bioconductor-edger

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-edger:<tag>

(see bioconductor-edger/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-edger/README.html)