recipe bioconductor-enmix

Quality control and analysis tools for Illumina DNA methylation BeadChip

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ENmix.html

License:

Artistic-2.0

Recipe:

/bioconductor-enmix/meta.yaml

Tools for quanlity control, analysis and visulization of Illumina DNA methylation array data.

package bioconductor-enmix

versions:

1.38.01-0,  1.36.01-0,  1.34.0-0,  1.30.0-0,  1.28.2-0,  1.26.8-0,  1.26.0-0,  1.25.1-0,  1.22.0-0, 

1.38.01-0,  1.36.01-0,  1.34.0-0,  1.30.0-0,  1.28.2-0,  1.26.8-0,  1.26.0-0,  1.25.1-0,  1.22.0-0,  1.20.3-0,  1.18.0-0

depends bioconductor-annotationhub:

>=3.10.0,<3.11.0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends bioconductor-genefilter:

>=1.84.0,<1.85.0

depends bioconductor-geneplotter:

>=1.80.0,<1.81.0

depends bioconductor-illuminaio:

>=0.44.0,<0.45.0

depends bioconductor-impute:

>=1.76.0,<1.77.0

depends bioconductor-iranges:

>=2.36.0,<2.37.0

depends bioconductor-minfi:

>=1.48.0,<1.49.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends r-base:

>=4.3,<4.4.0a0

depends r-doparallel:

depends r-dynamictreecut:

depends r-foreach:

depends r-gplots:

depends r-gtools:

depends r-irlba:

depends r-matrixstats:

depends r-quadprog:

depends r-rpmm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-enmix

and update with::

   mamba update bioconductor-enmix

To create a new environment, run:

mamba create --name myenvname bioconductor-enmix

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-enmix:<tag>

(see `bioconductor-enmix/tags`_ for valid values for ``<tag>``)

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Link to this page

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