- recipe bioconductor-enrichmentbrowser
Seamless navigation through combined results of set-based and network-based enrichment analysis
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/EnrichmentBrowser.html
- License:
Artistic-2.0
- Recipe:
The EnrichmentBrowser package implements essential functionality for the enrichment analysis of gene expression data. The analysis combines the advantages of set-based and network-based enrichment analysis in order to derive high-confidence gene sets and biological pathways that are differentially regulated in the expression data under investigation. Besides, the package facilitates the visualization and exploration of such sets and pathways.
- package bioconductor-enrichmentbrowser¶
-
- Versions:
2.28.0-0
,2.24.0-0
,2.22.0-0
,2.20.7-0
,2.20.0-0
,2.18.0-0
,2.16.0-0
,2.14.3-0
,2.12.0-0
,2.28.0-0
,2.24.0-0
,2.22.0-0
,2.20.7-0
,2.20.0-0
,2.18.0-0
,2.16.0-0
,2.14.3-0
,2.12.0-0
,2.10.11-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biocfilecache
>=2.6.0,<2.7.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-go.db
>=3.16.0,<3.17.0
bioconductor-graph
>=1.76.0,<1.77.0
bioconductor-graphite
>=1.44.0,<1.45.0
bioconductor-gseabase
>=1.60.0,<1.61.0
bioconductor-kegggraph
>=1.58.0,<1.59.0
bioconductor-keggrest
>=1.38.0,<1.39.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-pathview
>=1.38.0,<1.39.0
bioconductor-rgraphviz
>=2.42.0,<2.43.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-safe
>=3.38.0,<3.39.0
bioconductor-spia
>=2.50.0,<2.51.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-enrichmentbrowser
and update with:
conda update bioconductor-enrichmentbrowser
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-enrichmentbrowser:<tag>
(see bioconductor-enrichmentbrowser/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-enrichmentbrowser/README.html)