recipe bioconductor-erssa

Empirical RNA-seq Sample Size Analysis

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ERSSA.html

License

GPL-3 | file LICENSE

Recipe

/bioconductor-erssa/meta.yaml

The ERSSA package takes user supplied RNA-seq differential expression dataset and calculates the number of differentially expressed genes at varying biological replicate levels. This allows the user to determine, without relying on any a priori assumptions, whether sufficient differential detection has been acheived with their RNA-seq dataset.

package bioconductor-erssa

Versions

1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-deseq2 >=1.34.0,<1.35.0

• bioconductor-edger >=3.36.0,<3.37.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2 >=3.0.0

• r-plyr >=1.8.4

• r-rcolorbrewer >=1.1-2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-erssa

and update with:

conda update bioconductor-erssa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-erssa:<tag>

(see bioconductor-erssa/tags for valid values for <tag>)

Download stats

Link to this page

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