- recipe bioconductor-erssa
Empirical RNA-seq Sample Size Analysis
- Homepage
- License
GPL-3 | file LICENSE
- Recipe
The ERSSA package takes user supplied RNA-seq differential expression dataset and calculates the number of differentially expressed genes at varying biological replicate levels. This allows the user to determine, without relying on any a priori assumptions, whether sufficient differential detection has been acheived with their RNA-seq dataset.
- package bioconductor-erssa¶
-
- Versions
1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.0-0
- Depends
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-edger
>=3.36.0,<3.37.0
r-base
>=4.1,<4.2.0a0
r-ggplot2
>=3.0.0
r-plyr
>=1.8.4
r-rcolorbrewer
>=1.1-2
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-erssa
and update with:
conda update bioconductor-erssa
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-erssa:<tag>
(see bioconductor-erssa/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-erssa/README.html)