recipe bioconductor-etec16s

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/etec16s.html

License:

Artistic-2.0

Recipe:

/bioconductor-etec16s/meta.yaml

16S rRNA gene sequencing data to study changes in the faecal microbiota of 12 volunteers during a human challenge study with ETEC (H10407) and subsequent treatment with ciprofloxacin.

package bioconductor-etec16s

Versions:

1.26.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1, 

1.26.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-data-packages >=20221104

• bioconductor-metagenomeseq >=1.40.0,<1.41.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-etec16s

and update with:

conda update bioconductor-etec16s

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-etec16s:<tag>

(see bioconductor-etec16s/tags for valid values for <tag>)

Download stats

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