recipe bioconductor-etec16s

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/etec16s.html

License

Artistic-2.0

Recipe

/bioconductor-etec16s/meta.yaml

16S rRNA gene sequencing data to study changes in the faecal microbiota of 12 volunteers during a human challenge study with ETEC (H10407) and subsequent treatment with ciprofloxacin.

package bioconductor-etec16s

Versions

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-metagenomeseq >=1.36.0,<1.37.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-etec16s

and update with:

conda update bioconductor-etec16s

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-etec16s:<tag>

(see bioconductor-etec16s/tags for valid values for <tag>)

Download stats

Link to this page

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