bioconductor-exomecopy

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Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.

Home http://bioconductor.org/packages/3.6/bioc/html/exomeCopy.html
Versions 1.22.0, 1.24.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-exomecopy

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-exomecopy

and update with:

conda update bioconductor-exomecopy

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-exomecopy.