recipe bioconductor-faahko

Saghatelian et al. (2004) FAAH knockout LC/MS data






Positive ionization mode data in NetCDF file format. Centroided subset from 200-600 m/z and 2500-4500 seconds. Data originally reported in "Assignment of Endogenous Substrates to Enzymes by Global Metabolite Profiling" Biochemistry; 2004; 43(45). Also includes detected peaks in an xcmsSet.

package bioconductor-faahko

(downloads) docker_bioconductor-faahko



depends bioconductor-data-packages:


depends bioconductor-xcms:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-faahko

and update with::

   mamba update bioconductor-faahko

To create a new environment, run:

mamba create --name myenvname bioconductor-faahko

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-faahko/tags`_ for valid values for ``<tag>``)

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