recipe bioconductor-fastqcleaner

An interactive web application for quality control, filtering and trimming of FASTQ files. This user-friendly tool combines a pipeline for data processing based on Biostrings and ShortRead infrastructure, with a cutting-edge visual environment. Single-Read and Paired-End files can be locally processed. Diagnostic interactive plots (CG content, per-base sequence quality, etc.) are provided for both the input and output files.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/FastqCleaner.html

License

GPL (>= 2)

Recipe

/bioconductor-fastqcleaner/meta.yaml

package bioconductor-fastqcleaner

(downloads) docker_bioconductor-fastqcleaner

Versions

1.2.0-1, 1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fastqcleaner

and update with:

conda update bioconductor-fastqcleaner

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fastqcleaner:<tag>

(see bioconductor-fastqcleaner/tags for valid values for <tag>)