recipe bioconductor-fcscan

fcScan for detecting clusters of coordinates with user defined options

Homepage

https://bioconductor.org/packages/3.11/bioc/html/fcScan.html

License

Artistic-2.0

Recipe

/bioconductor-fcscan/meta.yaml

This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.

package bioconductor-fcscan

(downloads) docker_bioconductor-fcscan

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fcscan

and update with:

conda update bioconductor-fcscan

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fcscan:<tag>

(see bioconductor-fcscan/tags for valid values for <tag>)