recipe bioconductor-fella

Enrichment of metabolomics data using KEGG entries. Given a set of affected compounds, FELLA suggests affected reactions, enzymes, modules and pathways using label propagation in a knowledge model network. The resulting subnetwork can be visualised and exported.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/FELLA.html

License

GPL-3

Recipe

/bioconductor-fella/meta.yaml

package bioconductor-fella

(downloads) docker_bioconductor-fella

Versions

1.2.0-1, 1.2.0-0

Depends bioconductor-keggrest

>=1.22.0,<1.23.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-igraph

Depends r-matrix

Depends r-plyr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fella

and update with:

conda update bioconductor-fella

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fella:<tag>

(see bioconductor-fella/tags for valid values for <tag>)