recipe bioconductor-ffpe

Quality assessment and control for FFPE microarray expression data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ffpe.html

License

GPL (>2)

Recipe

/bioconductor-ffpe/meta.yaml

Links

biotools: ffpe

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

package bioconductor-ffpe

(downloads) docker_bioconductor-ffpe

Versions

1.32.0-01.30.0-01.28.0-11.26.0-01.24.0-01.22.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ffpe

and update with:

conda update bioconductor-ffpe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ffpe:<tag>

(see bioconductor-ffpe/tags for valid values for <tag>)