-
recipe
bioconductor-ffpe
Quality assessment and control for FFPE microarray expression data
- Homepage
- License
GPL (>2)
- Recipe
- Links
biotools: ffpe
Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).
-
package
bioconductor-ffpe
¶ -
- Versions
1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
- Depends
bioconductor-affy
>=1.68.0,<1.69.0
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-lumi
>=2.42.0,<2.43.0
bioconductor-methylumi
>=2.36.0,<2.37.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ffpe
and update with:
conda update bioconductor-ffpe
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ffpe:<tag>
(see bioconductor-ffpe/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ffpe/README.html)