recipe bioconductor-ffpe

Quality assessment and control for FFPE microarray expression data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/ffpe.html

License

GPL (>2)

Recipe

/bioconductor-ffpe/meta.yaml

Links

biotools: ffpe

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

package bioconductor-ffpe

Versions

1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0

Depends

• bioconductor-affy >=1.68.0,<1.69.0

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-lumi >=2.42.0,<2.43.0

• bioconductor-methylumi >=2.36.0,<2.37.0

• r-base >=4.0,<4.1.0a0

• r-sfsmisc

• r-ttr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ffpe

and update with:

conda update bioconductor-ffpe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ffpe:<tag>

(see bioconductor-ffpe/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ffpe/README.html)