recipe bioconductor-fishalyser

FISHalyseR a package for automated FISH quantification

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/FISHalyseR.html

License:

Artistic-2.0

Recipe:

/bioconductor-fishalyser/meta.yaml

Links:

biotools: fishalyser, doi: 10.1038/nmeth.3252

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

package bioconductor-fishalyser

Versions:

1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-1, 

1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-ebimage >=4.40.0,<4.41.0

• r-abind

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-fishalyser

and update with:

conda update bioconductor-fishalyser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fishalyser:<tag>

(see bioconductor-fishalyser/tags for valid values for <tag>)

Download stats

Link to this page

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