bioconductor-fishalyser

downloads

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

Home http://bioconductor.org/packages/3.7/bioc/html/FISHalyseR.html
Versions 1.14.0, 1.12.0, 1.10.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-fishalyser
Links biotools: fishalyser, doi: 10.1038/nmeth.3252

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fishalyser

and update with:

conda update bioconductor-fishalyser

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-fishalyser.