recipe bioconductor-fishalyser

FISHalyseR a package for automated FISH quantification

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/FISHalyseR.html

License:

Artistic-2.0

Recipe:

/bioconductor-fishalyser/meta.yaml

Links:

biotools: fishalyser, doi: 10.1038/nmeth.3252

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

package bioconductor-fishalyser

(downloads) docker_bioconductor-fishalyser

versions:
1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0, 

1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

depends bioconductor-ebimage:

>=4.48.0,<4.49.0

depends r-abind:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-fishalyser

and update with::

   mamba update bioconductor-fishalyser

To create a new environment, run:

mamba create --name myenvname bioconductor-fishalyser

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-fishalyser:<tag>

(see `bioconductor-fishalyser/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-fishalyser/README.html)