recipe bioconductor-flowbin

Combining multitube flow cytometry data by binning






Software to combine flow cytometry data that has been multiplexed into multiple tubes with common markers between them, by establishing common bins across tubes in terms of the common markers, then determining expression within each tube for each bin in terms of the tube-specific markers.

package bioconductor-flowbin

(downloads) docker_bioconductor-flowbin



depends bioconductor-biocgenerics:


depends bioconductor-flowcore:


depends bioconductor-flowfp:


depends bioconductor-limma:


depends r-base:


depends r-class:

depends r-snow:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-flowbin

and update with::

   mamba update bioconductor-flowbin

To create a new environment, run:

mamba create --name myenvname bioconductor-flowbin

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-flowbin/tags`_ for valid values for ``<tag>``)

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