recipe bioconductor-geneexpressionsignature

Gene Expression Signature based Similarity Metric

Homepage

https://bioconductor.org/packages/3.11/bioc/html/GeneExpressionSignature.html

License

GPL-2

Recipe

/bioconductor-geneexpressionsignature/meta.yaml

This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.

package bioconductor-geneexpressionsignature

(downloads) docker_bioconductor-geneexpressionsignature

Versions

1.34.0-0, 1.32.0-0, 1.30.0-1, 1.28.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-geneexpressionsignature

and update with:

conda update bioconductor-geneexpressionsignature

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-geneexpressionsignature:<tag>

(see bioconductor-geneexpressionsignature/tags for valid values for <tag>)