- recipe bioconductor-genenetworkbuilder
GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/GeneNetworkBuilder.html
- License:
GPL (>= 2)
- Recipe:
Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.
- package bioconductor-genenetworkbuilder¶
-
- Versions:
1.40.0-0
,1.36.1-1
,1.36.1-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.40.0-0
,1.36.1-1
,1.36.1-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.1-0
,1.24.1-0
,1.24.0-0
- Depends:
bioconductor-graph
>=1.76.0,<1.77.0
bioconductor-rgraphviz
>=2.42.0,<2.43.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-rcpp
>=0.9.13
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-genenetworkbuilder
and update with:
conda update bioconductor-genenetworkbuilder
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genenetworkbuilder:<tag>
(see bioconductor-genenetworkbuilder/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genenetworkbuilder/README.html)