bioconductor-geneplast

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Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

Home http://bioconductor.org/packages/3.7/bioc/html/geneplast.html
Versions 1.6.2, 1.4.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-geneplast
Links biotools: geneplast, doi: 10.1038/nmeth.3252

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-geneplast

and update with:

conda update bioconductor-geneplast

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-geneplast.