recipe bioconductor-geneplast

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/geneplast.html

License

GPL (>= 2)

Recipe

/bioconductor-geneplast/meta.yaml

Links

biotools: geneplast, doi: 10.1038/nmeth.3252

package bioconductor-geneplast

(downloads) docker_bioconductor-geneplast

Versions

1.10.0-0, 1.8.0-0, 1.6.2-0, 1.4.0-0

Depends r-ape

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-igraph

Depends r-snow

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-geneplast

and update with:

conda update bioconductor-geneplast

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-geneplast:<tag>

(see bioconductor-geneplast/tags for valid values for <tag>)