bioconductor-generegionscan

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A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.

Home http://bioconductor.org/packages/3.7/bioc/html/GeneRegionScan.html
Versions 1.36.0, 1.34.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-generegionscan
Links biotools: generegionscan

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-generegionscan

and update with:

conda update bioconductor-generegionscan

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-generegionscan.