recipe bioconductor-genestructuretools

Tools for spliced gene structure manipulation and analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GeneStructureTools.html

License:

BSD_3_clause + file LICENSE

Recipe:

/bioconductor-genestructuretools/meta.yaml

GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.

package bioconductor-genestructuretools

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome.mmusculus.ucsc.mm10 >=1.4.0,<1.5.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-gviz >=1.42.0,<1.43.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-plyr

• r-stringdist

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genestructuretools

and update with:

conda update bioconductor-genestructuretools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genestructuretools:<tag>

(see bioconductor-genestructuretools/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genestructuretools/README.html)