recipe bioconductor-genetclassifier

Classify diseases and build associated gene networks using gene expression profiles

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/geNetClassifier.html

License:

GPL (>= 2)

Recipe:

/bioconductor-genetclassifier/meta.yaml

Links:

biotools: genetclassifier

Comprehensive package to automatically train and validate a multi-class SVM classifier based on gene expression data. Provides transparent selection of gene markers, their coexpression networks, and an interface to query the classifier.

package bioconductor-genetclassifier

Versions:

1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0, 

1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-ebarrays >=2.62.0,<2.63.0

• bioconductor-minet >=3.56.0,<3.57.0

• r-base >=4.2,<4.3.0a0

• r-e1071

Required By:

• bioconductor-biocancer

• bioconductor-cancer

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genetclassifier

and update with:

conda update bioconductor-genetclassifier

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genetclassifier:<tag>

(see bioconductor-genetclassifier/tags for valid values for <tag>)

Download stats

Link to this page

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