recipe bioconductor-genomeinfodb

Contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., “chr1” versus “1”), including a function that attempts to place sequence names in their natural, rather than lexicographic, order.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GenomeInfoDb.html

License

Artistic-2.0

Recipe

/bioconductor-genomeinfodb/meta.yaml

Links

biotools: genomeinfodb, doi: 10.1038/nmeth.3252

package bioconductor-genomeinfodb

(downloads) docker_bioconductor-genomeinfodb

Versions

1.18.1-0, 1.16.0-0, 1.14.0-0, 1.12.3-0, 1.10.3-0, 1.8.7-0, 1.6.3-0, 1.6.1-0, 1.6.0-0, 1.4.3-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-genomeinfodbdata

>=1.2.0,<1.3.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-rcurl

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomeinfodb

and update with:

conda update bioconductor-genomeinfodb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomeinfodb:<tag>

(see bioconductor-genomeinfodb/tags for valid values for <tag>)