recipe bioconductor-genomeintervals

Operations on genomic intervals

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/genomeIntervals.html

License:

Artistic-2.0

Recipe:

/bioconductor-genomeintervals/meta.yaml

Links:

biotools: genomeintervals, doi: 10.1038/nmeth.3252

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

package bioconductor-genomeintervals

Versions:

1.54.0-0,  1.50.0-0,  1.48.0-0,  1.46.0-1,  1.46.0-0,  1.43.0-0,  1.42.0-0,  1.40.0-1,  1.38.0-0, 

1.54.0-0,  1.50.0-0,  1.48.0-0,  1.46.0-1,  1.46.0-0,  1.43.0-0,  1.42.0-0,  1.40.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-intervals >=0.14.0

Required By:

• bioconductor-chic.data

• bioconductor-girafe

• bioconductor-easyrnaseq

• bioconductor-chic

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genomeintervals

and update with:

conda update bioconductor-genomeintervals

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomeintervals:<tag>

(see bioconductor-genomeintervals/tags for valid values for <tag>)

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