recipe bioconductor-genomicalignments

Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/GenomicAlignments.html

License

Artistic-2.0

Recipe

/bioconductor-genomicalignments/meta.yaml

Links

biotools: genomicalignments

package bioconductor-genomicalignments

(downloads) docker_bioconductor-genomicalignments

Versions

1.18.1-0, 1.18.0-0, 1.16.0-0, 1.14.1-0, 1.14.0-0, 1.12.2-0, 1.10.0-0, 1.8.4-0, 1.6.3-1, 1.6.3-0, 1.6.1-0, 1.6.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicalignments

and update with:

conda update bioconductor-genomicalignments

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicalignments:<tag>

(see bioconductor-genomicalignments/tags for valid values for <tag>)