- recipe bioconductor-genomicalignments
Representation and manipulation of short genomic alignments
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/GenomicAlignments.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: genomicalignments
Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
- package bioconductor-genomicalignments¶
-
- Versions:
1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.1-0
,1.20.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.1-0
,1.20.0-0
,1.18.1-0
,1.18.0-0
,1.16.0-0
,1.14.1-0
,1.14.0-0
,1.12.2-0
,1.10.0-0
,1.8.4-0
,1.6.3-1
,1.6.3-0
,1.6.1-0
,1.6.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-genomicalignments
and update with:
conda update bioconductor-genomicalignments
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicalignments:<tag>
(see bioconductor-genomicalignments/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicalignments/README.html)