-
recipe
bioconductor-genomicalignments¶ Representation and manipulation of short genomic alignments
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/GenomicAlignments.html
- License
Artistic-2.0
- Recipe
- Links
biotools: genomicalignments
Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
-
package
bioconductor-genomicalignments¶ 
- Versions
1.22.0-0, 1.20.1-0, 1.20.0-0, 1.18.1-0, 1.18.0-0, 1.16.0-0, 1.14.1-0, 1.14.0-0, 1.12.2-0, 1.10.0-0, 1.8.4-0, 1.6.3-1, 1.6.3-0, 1.6.1-0, 1.6.0-0
- Depends
bioconductor-biocgenerics >=0.32.0,<0.33.0
bioconductor-biocparallel >=1.20.0,<1.21.0
bioconductor-biostrings >=2.54.0,<2.55.0
bioconductor-genomeinfodb >=1.22.0,<1.23.0
bioconductor-genomicranges >=1.38.0,<1.39.0
bioconductor-iranges >=2.20.0,<2.21.0
bioconductor-rsamtools >=2.2.0,<2.3.0
bioconductor-s4vectors >=0.24.0,<0.25.0
bioconductor-summarizedexperiment >=1.16.0,<1.17.0
libgcc-ng >=7.3.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-genomicalignments
and update with:
conda update bioconductor-genomicalignments
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicalignments:<tag>
(see bioconductor-genomicalignments/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicalignments/README.html)