-
recipe
bioconductor-genomicalignments¶ Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/GenomicAlignments.html
- License
Artistic-2.0
- Recipe
- Links
biotools: genomicalignments
-
package
bioconductor-genomicalignments¶ 
- Versions
1.18.1-0, 1.18.0-0, 1.16.0-0, 1.14.1-0, 1.14.0-0, 1.12.2-0, 1.10.0-0, 1.8.4-0, 1.6.3-1, 1.6.3-0, 1.6.1-0, 1.6.0-0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-biocparallel
>=1.16.0,<1.17.0
- Depends bioconductor-biostrings
>=2.50.0,<2.51.0
- Depends bioconductor-genomeinfodb
>=1.18.0,<1.19.0
- Depends bioconductor-genomicranges
>=1.34.0,<1.35.0
- Depends bioconductor-iranges
>=2.16.0,<2.17.0
- Depends bioconductor-rsamtools
>=1.34.0,<1.35.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-summarizedexperiment
>=1.12.0,<1.13.0
- Depends libgcc-ng
>=7.3.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-genomicalignments
and update with:
conda update bioconductor-genomicalignments
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicalignments:<tag>
(see bioconductor-genomicalignments/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicalignments/README.html)