Package Recipe 'bioconductor-genomicfeatures'

recipe bioconductor-genomicfeatures¶

A set of tools and methods for making and manipulating transcript centric annotations.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/GenomicFeatures.html
License: Artistic-2.0
Recipe: /bioconductor-genomicfeatures/meta.yaml
Links: biotools: genomicfeatures

package bioconductor-genomicfeatures¶

Versions

1.36.4-0, 1.36.0-0, 1.34.1-0, 1.32.3-0, 1.30.3-0, 1.30.0-0, 1.28.5-0, 1.26.4-0, 1.26.0-2, 1.24.5-2, 1.24.5-1, 1.24.5-0, 1.22.13-0, 1.22.6-0, 1.22.4-0, 1.22.0-0

Depends

bioconductor-annotationdbi >=1.46.0,<1.47.0
bioconductor-biobase >=2.44.0,<2.45.0
bioconductor-biocgenerics >=0.30.0,<0.31.0
bioconductor-biomart >=2.40.0,<2.41.0
bioconductor-biostrings >=2.52.0,<2.53.0
bioconductor-genomeinfodb >=1.20.0,<1.21.0
bioconductor-genomicranges >=1.36.0,<1.37.0
bioconductor-iranges >=2.18.0,<2.19.0
bioconductor-rtracklayer >=1.44.0,<1.45.0
bioconductor-s4vectors >=0.22.0,<0.23.0
bioconductor-xvector >=0.24.0,<0.25.0
r-base >=3.6,<3.7.0a0
r-dbi
r-rcurl
r-rsqlite >=2.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicfeatures

and update with:

conda update bioconductor-genomicfeatures

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicfeatures:<tag>

(see bioconductor-genomicfeatures/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genomicfeatures/README.html)