- recipe bioconductor-genomicfeatures
Conveniently import and query gene models
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/GenomicFeatures.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: genomicfeatures
A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.
- package bioconductor-genomicfeatures¶
-
- Versions:
1.50.2-0
,1.46.1-0
,1.44.0-0
,1.42.2-0
,1.42.0-0
,1.40.0-0
,1.38.0-0
,1.36.4-0
,1.36.0-0
,1.50.2-0
,1.46.1-0
,1.44.0-0
,1.42.2-0
,1.42.0-0
,1.40.0-0
,1.38.0-0
,1.36.4-0
,1.36.0-0
,1.34.1-0
,1.32.3-0
,1.30.3-0
,1.30.0-0
,1.28.5-0
,1.26.4-0
,1.26.0-2
,1.24.5-2
,1.24.5-1
,1.24.5-0
,1.22.13-0
,1.22.6-0
,1.22.4-0
,1.22.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocio
>=1.8.0,<1.9.0
bioconductor-biomart
>=2.54.0,<2.55.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-xvector
>=0.38.0,<0.39.0
r-base
>=4.2,<4.3.0a0
r-rsqlite
>=2.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-genomicfeatures
and update with:
conda update bioconductor-genomicfeatures
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicfeatures:<tag>
(see bioconductor-genomicfeatures/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicfeatures/README.html)