-
recipe
bioconductor-genomicfeatures¶ Conveniently import and query gene models
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/GenomicFeatures.html
- License
Artistic-2.0
- Recipe
- Links
biotools: genomicfeatures
A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.
-
package
bioconductor-genomicfeatures¶ 
- Versions
1.38.0-0, 1.36.4-0, 1.36.0-0, 1.34.1-0, 1.32.3-0, 1.30.3-0, 1.30.0-0, 1.28.5-0, 1.26.4-0, 1.26.0-2, 1.24.5-2, 1.24.5-1, 1.24.5-0, 1.22.13-0, 1.22.6-0, 1.22.4-0, 1.22.0-0
- Depends
bioconductor-annotationdbi >=1.48.0,<1.49.0
bioconductor-biobase >=2.46.0,<2.47.0
bioconductor-biocgenerics >=0.32.0,<0.33.0
bioconductor-biomart >=2.42.0,<2.43.0
bioconductor-biostrings >=2.54.0,<2.55.0
bioconductor-genomeinfodb >=1.22.0,<1.23.0
bioconductor-genomicranges >=1.38.0,<1.39.0
bioconductor-iranges >=2.20.0,<2.21.0
bioconductor-rtracklayer >=1.46.0,<1.47.0
bioconductor-s4vectors >=0.24.0,<0.25.0
bioconductor-xvector >=0.26.0,<0.27.0
r-base >=3.6,<3.7.0a0
r-rsqlite >=2.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-genomicfeatures
and update with:
conda update bioconductor-genomicfeatures
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicfeatures:<tag>
(see bioconductor-genomicfeatures/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicfeatures/README.html)