-
recipe
bioconductor-genomicfeatures¶ A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.
- Homepage
https://bioconductor.org/packages/3.8/bioc/html/GenomicFeatures.html
- License
Artistic-2.0
- Recipe
- Links
biotools: genomicfeatures
-
package
bioconductor-genomicfeatures¶ 
- Versions
1.34.1-0, 1.32.3-0, 1.30.3-0, 1.30.0-0, 1.28.5-0, 1.26.4-0, 1.26.0-2, 1.24.5-2, 1.24.5-1, 1.24.5-0, 1.22.13-0, 1.22.6-0, 1.22.4-0, 1.22.0-0
- Depends
bioconductor-annotationdbi >=1.44.0,<1.45.0
bioconductor-biobase >=2.42.0,<2.43.0
bioconductor-biocgenerics >=0.28.0,<0.29.0
bioconductor-biomart >=2.38.0,<2.39.0
bioconductor-biostrings >=2.50.0,<2.51.0
bioconductor-genomeinfodb >=1.18.0,<1.19.0
bioconductor-genomicranges >=1.34.0,<1.35.0
bioconductor-iranges >=2.16.0,<2.17.0
bioconductor-rtracklayer >=1.42.0,<1.43.0
bioconductor-s4vectors >=0.20.0,<0.21.0
bioconductor-xvector >=0.22.0,<0.23.0
r-base >=3.5.1,<3.5.2.0a0
r-rsqlite >=2.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-genomicfeatures
and update with:
conda update bioconductor-genomicfeatures
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicfeatures:<tag>
(see bioconductor-genomicfeatures/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicfeatures/README.html)