recipe bioconductor-genomicfeatures

Conveniently import and query gene models

Homepage

https://bioconductor.org/packages/3.11/bioc/html/GenomicFeatures.html

License

Artistic-2.0

Recipe

/bioconductor-genomicfeatures/meta.yaml

Links

biotools: genomicfeatures

A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.

package bioconductor-genomicfeatures

(downloads) docker_bioconductor-genomicfeatures

Versions
1.40.0-01.38.0-01.36.4-01.36.0-01.34.1-01.32.3-01.30.3-01.30.0-01.28.5-0

1.40.0-01.38.0-01.36.4-01.36.0-01.34.1-01.32.3-01.30.3-01.30.0-01.28.5-01.26.4-01.26.0-21.24.5-21.24.5-11.24.5-01.22.13-01.22.6-01.22.4-01.22.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicfeatures

and update with:

conda update bioconductor-genomicfeatures

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicfeatures:<tag>

(see bioconductor-genomicfeatures/tags for valid values for <tag>)