recipe bioconductor-genvisr

Genomic Visualizations in R



GPL-3 + file LICENSE




biotools: genvisr

Produce highly customizable publication quality graphics for genomic data primarily at the cohort level.

package bioconductor-genvisr

(downloads) docker_bioconductor-genvisr



depends bioconductor-annotationdbi:


depends bioconductor-biocgenerics:


depends bioconductor-biomart:


depends bioconductor-biostrings:


depends bioconductor-bsgenome:


depends bioconductor-genomeinfodb:


depends bioconductor-genomicfeatures:


depends bioconductor-genomicranges:


depends bioconductor-iranges:


depends bioconductor-rsamtools:


depends bioconductor-variantannotation:


depends r-base:


depends r-data.table:

depends r-dbi:

depends r-ggplot2:


depends r-gridextra:


depends r-gtable:

depends r-gtools:

depends r-plyr:


depends r-reshape2:

depends r-scales:

depends r-viridis:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-genvisr

and update with::

   mamba update bioconductor-genvisr

To create a new environment, run:

mamba create --name myenvname bioconductor-genvisr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-genvisr/tags`_ for valid values for ``<tag>``)

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