- recipe bioconductor-geoquery
Get data from NCBI Gene Expression Omnibus (GEO)
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/GEOquery.html
- License:
MIT
- Recipe:
- Links:
biotools: geoquery
The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.
- package bioconductor-geoquery¶
-
- Versions:
2.66.0-0
,2.62.0-0
,2.60.0-0
,2.58.0-1
,2.58.0-0
,2.56.0-1
,2.56.0-0
,2.54.0-0
,2.52.0-1
,2.66.0-0
,2.62.0-0
,2.60.0-0
,2.58.0-1
,2.58.0-0
,2.56.0-1
,2.56.0-0
,2.54.0-0
,2.52.0-1
,2.50.5-0
,2.50.0-0
,2.48.0-0
,2.46.3-0
,2.46.0-0
,2.42.0-0
,2.38.4-0
,2.36.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-limma
>=3.54.0,<3.55.0
r-base
>=4.2,<4.3.0a0
r-readr
>=1.3.1
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-geoquery
and update with:
conda update bioconductor-geoquery
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-geoquery:<tag>
(see bioconductor-geoquery/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-geoquery/README.html)