-
recipe
bioconductor-ggcyto
Visualize Cytometry data with ggplot
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/ggcyto.html
- License
Artistic-2.0
- Recipe
- Links
biotools: ggcyto, doi: 10.1038/nmeth.3252
With the dedicated fortify method implemented for flowSet, ncdfFlowSet and GatingSet classes, both raw and gated flow cytometry data can be plotted directly with ggplot. ggcyto wrapper and some customed layers also make it easy to add gates and population statistics to the plot.
-
package
bioconductor-ggcyto
¶ -
- Versions
1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.2-0
,1.10.0-0
,1.8.2-0
,1.6.0-0
,1.4.1-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.2-0
,1.10.0-0
,1.8.2-0
,1.6.0-0
,1.4.1-0
,1.4.0-0
- Depends
bioconductor-flowcore
>=2.2.0,<2.3.0
bioconductor-flowworkspace
>=4.2.0,<4.3.0
bioconductor-ncdfflow
>=2.36.0,<2.37.0
r-base
>=4.0,<4.1.0a0
r-ggplot2
>=3.3.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ggcyto
and update with:
conda update bioconductor-ggcyto
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ggcyto:<tag>
(see bioconductor-ggcyto/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ggcyto/README.html)