recipe bioconductor-ggtree

an R package for visualization of tree and annotation data

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ggtree.html

License:

Artistic-2.0

Recipe:

/bioconductor-ggtree/meta.yaml

Links:

biotools: ggtree, doi: 10.1111/2041-210X.12628

'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees and other tree-like structures with their annotation data.

package bioconductor-ggtree

versions:

3.14.0-0,  3.10.0-0,  3.8.0-0,  3.6.0-0,  3.2.0-0,  3.0.1-0,  2.4.1-0,  2.4.0-0,  2.2.1-0, 

3.14.0-0,  3.10.0-0,  3.8.0-0,  3.6.0-0,  3.2.0-0,  3.0.1-0,  2.4.1-0,  2.4.0-0,  2.2.1-0,  2.0.0-0,  1.16.3-0,  1.16.0-0,  1.14.6-0,  1.14.4-0,  1.12.7-0,  1.10.0-0,  1.8.2-0,  1.4.20-0,  1.2.12-0

depends bioconductor-treeio:

>=1.30.0,<1.31.0

depends r-ape:

depends r-aplot:

depends r-base:

>=4.4,<4.5.0a0

depends r-cli:

depends r-dplyr:

depends r-ggfun:

>=0.1.7

depends r-ggplot2:

>3.3.6

depends r-magrittr:

depends r-purrr:

depends r-rlang:

depends r-scales:

depends r-tidyr:

depends r-tidytree:

>=0.4.5

depends r-yulab.utils:

>=0.1.6

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ggtree

and update with::

   mamba update bioconductor-ggtree

To create a new environment, run:

mamba create --name myenvname bioconductor-ggtree

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ggtree:<tag>

(see `bioconductor-ggtree/tags`_ for valid values for ``<tag>``)

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Link to this page

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