recipe bioconductor-gispa

GISPA: Method for Gene Integrated Set Profile Analysis

Homepage

https://bioconductor.org/packages/3.14/bioc/html/GISPA.html

License

GPL-2

Recipe

/bioconductor-gispa/meta.yaml

GISPA is a method intended for the researchers who are interested in defining gene sets with similar, a priori specified molecular profile. GISPA method has been previously published in Nucleic Acid Research (Kowalski et al., 2016; PMID: 26826710).

package bioconductor-gispa

Versions

1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-1,  1.6.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-genefilter >=1.76.0,<1.77.0

• bioconductor-gseabase >=1.56.0,<1.57.0

• r-base >=4.1,<4.2.0a0

• r-changepoint

• r-data.table

• r-hh

• r-lattice

• r-latticeextra

• r-plyr

• r-scatterplot3d

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gispa

and update with:

conda update bioconductor-gispa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gispa:<tag>

(see bioconductor-gispa/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gispa/README.html)