recipe bioconductor-globaltest

Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/globaltest.html

License:

GPL (>= 2)

Recipe:

/bioconductor-globaltest/meta.yaml

Links:

biotools: globaltest

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

package bioconductor-globaltest

(downloads) docker_bioconductor-globaltest

versions:
5.56.0-0,  5.54.0-0,  5.52.0-0,  5.48.0-0,  5.46.0-0,  5.44.0-1,  5.44.0-0,  5.42.0-0,  5.40.0-0, 

5.56.0-0,  5.54.0-0,  5.52.0-0,  5.48.0-0,  5.46.0-0,  5.44.0-1,  5.44.0-0,  5.42.0-0,  5.40.0-0,  5.38.0-1,  5.36.0-1,  5.36.0-0,  5.34.1-0,  5.32.0-0,  5.30.0-0

depends bioconductor-annotate:

>=1.80.0,<1.81.0

depends bioconductor-annotationdbi:

>=1.64.0,<1.65.0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends r-base:

>=4.3,<4.4.0a0

depends r-survival:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-globaltest

and update with::

   mamba update bioconductor-globaltest

To create a new environment, run:

mamba create --name myenvname bioconductor-globaltest

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-globaltest:<tag>

(see `bioconductor-globaltest/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-globaltest/README.html)