recipe bioconductor-gosemsim

GO-terms Semantic Similarity Measures

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GOSemSim.html

License:

Artistic-2.0

Recipe:

/bioconductor-gosemsim/meta.yaml

Links:

biotools: gosemsim

The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively.

package bioconductor-gosemsim

Versions:

2.24.0-0,  2.20.0-2,  2.20.0-1,  2.20.0-0,  2.18.0-0,  2.16.1-0,  2.16.0-0,  2.14.0-0,  2.12.0-0, 

2.24.0-0,  2.20.0-2,  2.20.0-1,  2.20.0-0,  2.18.0-0,  2.16.1-0,  2.16.0-0,  2.14.0-0,  2.12.0-0,  2.10.0-1,  2.8.0-0,  2.6.2-0,  2.4.0-0,  2.2.0-1,  2.2.0-0,  1.30.3-0,  1.29.0-0,  1.28.2-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-go.db >=3.16.0,<3.17.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-rcpp

Required By:

• bioconductor-simplifyenrichment

• bioconductor-clusterprofiler

• bioconductor-meshes

• r-dgeclustering

• bioconductor-enrichplot

• bioconductor-rrvgo

• bioconductor-rcpi

• bioconductor-dose

• bioconductor-viseago

• bioconductor-translatome

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-gosemsim

and update with:

conda update bioconductor-gosemsim

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gosemsim:<tag>

(see bioconductor-gosemsim/tags for valid values for <tag>)

Download stats

Link to this page

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