- recipe bioconductor-gosemsim
GO-terms Semantic Similarity Measures
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/GOSemSim.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: gosemsim
The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively.
- package bioconductor-gosemsim¶
-
- Versions:
2.24.0-0
,2.20.0-2
,2.20.0-1
,2.20.0-0
,2.18.0-0
,2.16.1-0
,2.16.0-0
,2.14.0-0
,2.12.0-0
,2.24.0-0
,2.20.0-2
,2.20.0-1
,2.20.0-0
,2.18.0-0
,2.16.1-0
,2.16.0-0
,2.14.0-0
,2.12.0-0
,2.10.0-1
,2.8.0-0
,2.6.2-0
,2.4.0-0
,2.2.0-1
,2.2.0-0
,1.30.3-0
,1.29.0-0
,1.28.2-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-go.db
>=3.16.0,<3.17.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-gosemsim
and update with:
conda update bioconductor-gosemsim
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-gosemsim:<tag>
(see bioconductor-gosemsim/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-gosemsim/README.html)