bioconductor-gosemsim

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The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively.

Home http://bioconductor.org/packages/3.6/bioc/html/GOSemSim.html
Versions 1.28.2, 1.29.0, 1.30.3, 2.2.0, 2.4.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-gosemsim

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gosemsim

and update with:

conda update bioconductor-gosemsim

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-gosemsim.