bioconductor-gothic

downloads

This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.

Home http://bioconductor.org/packages/3.6/bioc/html/GOTHiC.html
Versions 1.10.0, 1.12.0, 1.14.0
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-gothic

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gothic

and update with:

conda update bioconductor-gothic

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-gothic.