recipe bioconductor-graphite

GRAPH Interaction from pathway Topological Environment

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/graphite.html

License:

AGPL-3

Recipe:

/bioconductor-graphite/meta.yaml

Links:

biotools: graphite

Graph objects from pathway topology derived from KEGG, Panther, PathBank, PharmGKB, Reactome SMPDB and WikiPathways databases.

package bioconductor-graphite

(downloads) docker_bioconductor-graphite

versions:
1.48.0-0,  1.46.0-0,  1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0, 

1.48.0-0,  1.46.0-0,  1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.28.2-0,  1.28.1-0,  1.26.3-0,  1.24.0-0,  1.22.0-0,  1.16.0-0

depends bioconductor-annotationdbi:

>=1.64.0,<1.65.0

depends bioconductor-graph:

>=1.80.0,<1.81.0

depends r-base:

>=4.3,<4.4.0a0

depends r-httr:

depends r-purrr:

depends r-rappdirs:

depends r-rlang:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-graphite

and update with::

   mamba update bioconductor-graphite

To create a new environment, run:

mamba create --name myenvname bioconductor-graphite

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-graphite:<tag>

(see `bioconductor-graphite/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-graphite/README.html)