recipe bioconductor-gse62944

GEO accession data GSE62944 as a SummarizedExperiment

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/GSE62944.html

License:

Artistic-2.0

Recipe:

/bioconductor-gse62944/meta.yaml

TCGA processed RNA-Seq data for 9264 tumor and 741 normal samples across 24 cancer types and made them available as GEO accession [GSE62944](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944). GSE62944 data have been parsed into a SummarizedExperiment object available in ExperimentHub.

package bioconductor-gse62944

(downloads) docker_bioconductor-gse62944

versions:
1.30.0-0,  1.28.1-0,  1.26.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0, 

1.30.0-0,  1.28.1-0,  1.26.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-geoquery:

>=2.70.0,<2.71.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gse62944

and update with::

   mamba update bioconductor-gse62944

To create a new environment, run:

mamba create --name myenvname bioconductor-gse62944

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-gse62944:<tag>

(see `bioconductor-gse62944/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gse62944/README.html)