recipe bioconductor-gsreg

A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GSReg.html

License

GPL-2

Recipe

/bioconductor-gsreg/meta.yaml

Links

biotools: gsreg, doi: 10.4137/CIN.S14066

package bioconductor-gsreg

(downloads) docker_bioconductor-gsreg

Versions

1.16.0-0, 1.14.0-0, 1.12.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-genomicfeatures

>=1.34.0,<1.35.0

Depends bioconductor-homo.sapiens

>=1.3.0,<1.4.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gsreg

and update with:

conda update bioconductor-gsreg

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gsreg:<tag>

(see bioconductor-gsreg/tags for valid values for <tag>)