recipe bioconductor-gsvadata

Data employed in the vignette of the GSVA package






This package stores the data employed in the vignette of the GSVA package. These data belong to the following publications: Armstrong et al. Nat Genet 30:41-47, 2002; Cahoy et al. J Neurosci 28:264-278, 2008; Carrel and Willard, Nature, 434:400-404, 2005; Huang et al. PNAS, 104:9758-9763, 2007; Pickrell et al. Nature, 464:768-722, 2010; Skaletsky et al. Nature, 423:825-837; Verhaak et al. Cancer Cell 17:98-110, 2010

package bioconductor-gsvadata

(downloads) docker_bioconductor-gsvadata



depends bioconductor-biobase:


depends bioconductor-data-packages:


depends bioconductor-gseabase:


depends bioconductor-hgu95a.db:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gsvadata

and update with::

   mamba update bioconductor-gsvadata

To create a new environment, run:

mamba create --name myenvname bioconductor-gsvadata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-gsvadata/tags`_ for valid values for ``<tag>``)

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