bioconductor-harman

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Harman is a PCA and constrained optimisation based technique that maximises the removal of batch effects from datasets, with the constraint that the probability of overcorrection (i.e. removing genuine biological signal along with batch noise) is kept to a fraction which is set by the end-user.

Home http://bioconductor.org/packages/3.7/bioc/html/Harman.html
Versions 1.8.0, 1.6.0
License GPL-3 + file LICENCE
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-harman
Links biotools: harman

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-harman

and update with:

conda update bioconductor-harman

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-harman.