recipe bioconductor-hellorangesdata

Data for the HelloRanges tutorial vignette



GPL (>= 2)



Provides the data that were used in the bedtools tutorial by Aaron Quinlan ( Includes a subset of the DnaseI hypersensitivity data from "Maurano et al. Systematic Localization of Common Disease-Associated Variation in Regulatory DNA. Science. 2012. Vol. 337 no. 6099 pp. 1190-1195." The rest of the tracks were originally downloaded from the UCSC table browser. See the HelloRanges vignette for a port of the bedtools tutorial to R.

package bioconductor-hellorangesdata

(downloads) docker_bioconductor-hellorangesdata



depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-hellorangesdata

and update with::

   mamba update bioconductor-hellorangesdata

To create a new environment, run:

mamba create --name myenvname bioconductor-hellorangesdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-hellorangesdata/tags`_ for valid values for ``<tag>``)

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