recipe bioconductor-hicdatahumanimr90

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/HiCDataHumanIMR90.html

License:

GPL-3

Recipe:

/bioconductor-hicdatahumanimr90/meta.yaml

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

package bioconductor-hicdatahumanimr90

(downloads) docker_bioconductor-hicdatahumanimr90

versions:
1.22.0-0,  1.20.0-0,  1.17.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.9.0-0, 

1.22.0-0,  1.20.0-0,  1.17.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.9.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-hicdatahumanimr90

and update with::

   mamba update bioconductor-hicdatahumanimr90

To create a new environment, run:

mamba create --name myenvname bioconductor-hicdatahumanimr90

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-hicdatahumanimr90:<tag>

(see `bioconductor-hicdatahumanimr90/tags`_ for valid values for ``<tag>``)

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Render an install-with-bioconda badge with the following MarkDown:

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