recipe bioconductor-hicontactsdata

HiContacts companion data package

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/HiContactsData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-hicontactsdata/meta.yaml

Provides a collection of Hi-C files (pairs, (m)cool and fastq). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.

package bioconductor-hicontactsdata

(downloads) docker_bioconductor-hicontactsdata

versions:

1.4.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-annotationhub:

>=3.10.0,<3.11.0

depends bioconductor-biocfilecache:

>=2.10.0,<2.11.0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-hicontactsdata

and update with::

   mamba update bioconductor-hicontactsdata

To create a new environment, run:

mamba create --name myenvname bioconductor-hicontactsdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-hicontactsdata:<tag>

(see `bioconductor-hicontactsdata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-hicontactsdata/README.html)