recipe bioconductor-hiiragi2013

This package contains the experimental data and a complete executable transcript (vignette) of the statistical analysis presented in the paper “Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages” by Y. Ohnishi, W. Huber, A. Tsumura, M. Kang, P. Xenopoulos, K. Kurimoto, A. K. Oles, M. J. Arauzo-Bravo, M. Saitou, A.-K. Hadjantonakis and T. Hiiragi; Nature Cell Biology (2014) 16(1): 27-37. doi: 10.1038/ncb2881.”

Homepage

https://bioconductor.org/packages/3.9/data/experiment/html/Hiiragi2013.html

License

Artistic-2.0

Recipe

/bioconductor-hiiragi2013/meta.yaml

package bioconductor-hiiragi2013

(downloads) docker_bioconductor-hiiragi2013

Versions

1.18.0-0

Depends bioconductor-affy

>=1.60.0,<1.61.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-genefilter

>=1.64.0,<1.65.0

Depends bioconductor-geneplotter

>=1.60.0,<1.61.0

Depends bioconductor-keggrest

>=1.22.0,<1.23.0

Depends bioconductor-mouse4302.db

>=3.2.0,<3.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-boot

Depends r-clue

Depends r-cluster

Depends r-gplots

Depends r-gtools

Depends r-lattice

Depends r-latticeextra

Depends r-mass

Depends r-rcolorbrewer

Depends r-xtable

Depends wget

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hiiragi2013

and update with:

conda update bioconductor-hiiragi2013

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hiiragi2013:<tag>

(see bioconductor-hiiragi2013/tags for valid values for <tag>)