recipe bioconductor-hippo

Heterogeneity-Induced Pre-Processing tOol

Homepage

https://bioconductor.org/packages/3.11/bioc/html/HIPPO.html

License

GPL (>=2)

Recipe

/bioconductor-hippo/meta.yaml

For scRNA-seq data, it selects features and clusters the cells simultaneously for single-cell UMI data. It has a novel feature selection method using the zero inflation instead of gene variance, and computationally faster than other existing methods since it only relies on PCA+Kmeans rather than graph-clustering or consensus clustering.

package bioconductor-hippo

(downloads) docker_bioconductor-hippo

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-hippo

and update with:

conda update bioconductor-hippo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-hippo:<tag>

(see bioconductor-hippo/tags for valid values for <tag>)