recipe bioconductor-htqpcr

Automated analysis of high-throughput qPCR data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/HTqPCR.html

License

Artistic-2.0

Recipe

/bioconductor-htqpcr/meta.yaml

Links

biotools: htqpcr

Analysis of Ct values from high throughput quantitative real-time PCR (qPCR) assays across multiple conditions or replicates. The input data can be from spatially-defined formats such ABI TaqMan Low Density Arrays or OpenArray; LightCycler from Roche Applied Science; the CFX plates from Bio-Rad Laboratories; conventional 96- or 384-well plates; or microfluidic devices such as the Dynamic Arrays from Fluidigm Corporation. HTqPCR handles data loading, quality assessment, normalization, visualization and parametric or non-parametric testing for statistical significance in Ct values between features (e.g. genes, microRNAs).

package bioconductor-htqpcr

Versions

1.42.0-0,  1.40.0-0,  1.38.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0

Depends

• bioconductor-affy >=1.66.0,<1.67.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-limma >=3.44.0,<3.45.0

• r-base >=4.0,<4.1.0a0

• r-gplots

• r-rcolorbrewer

Required By

• bioconductor-nondetects

• bioconductor-unifiedwmwqpcr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-htqpcr

and update with:

conda update bioconductor-htqpcr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-htqpcr:<tag>

(see bioconductor-htqpcr/tags for valid values for <tag>)

Link to this page

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