recipe bioconductor-idr2d

Irreproducible Discovery Rate for Genomic Interactions Data

Homepage

https://bioconductor.org/packages/3.10/bioc/html/idr2d.html

License

MIT + file LICENSE

Recipe

/bioconductor-idr2d/meta.yaml

A tool to measure reproducibility between genomic experiments that produce two-dimensional peaks (interactions between peaks), such as ChIA-PET, HiChIP, and HiC. idr2d is an extension of the original idr package, which is intended for (one-dimensional) ChIP-seq peaks.

package bioconductor-idr2d

(downloads) docker_bioconductor-idr2d

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-idr2d

and update with:

conda update bioconductor-idr2d

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-idr2d:<tag>

(see bioconductor-idr2d/tags for valid values for <tag>)