recipe bioconductor-ihwpaper

Reproduce figures in IHW paper

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/IHWpaper.html

License:

Artistic-2.0

Recipe:

/bioconductor-ihwpaper/meta.yaml

This package conveniently wraps all functions needed to reproduce the figures in the IHW paper (https://www.nature.com/articles/nmeth.3885) and the data analysis in https://rss.onlinelibrary.wiley.com/doi/10.1111/rssb.12411, cf. the arXiv preprint (http://arxiv.org/abs/1701.05179). Thus it is a companion package to the Bioconductor IHW package.

package bioconductor-ihwpaper

Versions:

1.26.0-0,  1.22.0-3,  1.22.0-2,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0, 

1.26.0-0,  1.22.0-3,  1.22.0-2,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-data-packages >=20221111

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-genefilter >=1.80.0,<1.81.0

• bioconductor-ihw >=1.26.0,<1.27.0

• bioconductor-qvalue >=2.30.0,<2.31.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl >=7.86.0,<8.0a0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-cowplot

• r-dplyr

• r-fdrtool

• r-ggplot2

• r-rcpp

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ihwpaper

and update with:

conda update bioconductor-ihwpaper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ihwpaper:<tag>

(see bioconductor-ihwpaper/tags for valid values for <tag>)

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