recipe bioconductor-iloreg

ILoReg: a tool for high-resolution cell population identification from scRNA-Seq data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ILoReg.html

License:

GPL-3

Recipe:

/bioconductor-iloreg/meta.yaml

ILoReg is a tool for identification of cell populations from scRNA-seq data. In particular, ILoReg is useful for finding cell populations with subtle transcriptomic differences. The method utilizes a self-supervised learning method, called Iteratitive Clustering Projection (ICP), to find cluster probabilities, which are used in noise reduction prior to PCA and the subsequent hierarchical clustering and t-SNE steps. Additionally, functions for differential expression analysis to find gene markers for the populations and gene expression visualization are provided.

package bioconductor-iloreg

(downloads) docker_bioconductor-iloreg

Versions:

1.8.0-01.4.0-01.2.0-01.0.0-11.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-iloreg

and update with:

conda update bioconductor-iloreg

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-iloreg:<tag>

(see bioconductor-iloreg/tags for valid values for <tag>)

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