- recipe bioconductor-inpas
A Bioconductor package for identifying novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data
- Homepage
- License
GPL (>= 2)
- Recipe
Alternative polyadenylation (APA) is one of the important post- transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites and the differential usage of APA sites from RNA-Seq data. It leverages cleanUpdTSeq to fine tune identified APA sites by removing false sites.
- package bioconductor-inpas¶
-
- Versions
2.2.0-0
,2.0.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.3-0
,1.14.1-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-cleanupdtseq
>=1.32.0,<1.33.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-plyranges
>=1.14.0,<1.15.0
bioconductor-preprocesscore
>=1.56.0,<1.57.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-inpas
and update with:
conda update bioconductor-inpas
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-inpas:<tag>
(see bioconductor-inpas/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-inpas/README.html)