- recipe bioconductor-inpas
Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data
- Homepage:
- License:
GPL (>= 2)
- Recipe:
Alternative polyadenylation (APA) is one of the important post- transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites and the differential usage of APA sites from RNA-Seq data. It leverages cleanUpdTSeq to fine tune identified APA sites by removing false sites.
- package bioconductor-inpas¶
-
- Versions:
2.6.0-0
,2.2.0-0
,2.0.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.3-0
,1.14.1-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-cleanupdtseq
>=1.36.0,<1.37.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-plyranges
>=1.18.0,<1.19.0
bioconductor-preprocesscore
>=1.60.0,<1.61.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-inpas
and update with:
conda update bioconductor-inpas
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-inpas:<tag>
(see bioconductor-inpas/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-inpas/README.html)