Package Recipe 'bioconductor-inpas'

recipe bioconductor-inpas¶

Alternative polyadenylation (APA) is one of the important post-transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites from RNAseq data. It leverages cleanUpdTSeq to fine tune identified APA sites.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/InPAS.html
License: GPL (>= 2)
Recipe: /bioconductor-inpas/meta.yaml

package bioconductor-inpas¶

Versions: 1.14.1-0
Depends bioconductor-annotationdbi: >=1.44.0,<1.45.0
Depends bioconductor-biobase: >=2.42.0,<2.43.0
Depends bioconductor-biocparallel: >=1.16.0,<1.17.0
Depends bioconductor-bsgenome: >=1.50.0,<1.51.0
Depends bioconductor-cleanupdtseq: >=1.20.0,<1.21.0
Depends bioconductor-genomeinfodb: >=1.18.0,<1.19.0
Depends bioconductor-genomicfeatures: >=1.34.0,<1.35.0
Depends bioconductor-genomicranges: >=1.34.0,<1.35.0
Depends bioconductor-gviz: >=1.26.0,<1.27.0
Depends bioconductor-iranges: >=2.16.0,<2.17.0
Depends bioconductor-limma: >=3.38.0,<3.39.0
Depends bioconductor-preprocesscore: >=1.44.0,<1.45.0
Depends bioconductor-s4vectors: >=0.20.0,<0.21.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-depmixs4
Depends r-seqinr
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-inpas

and update with:

conda update bioconductor-inpas

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-inpas:<tag>

(see bioconductor-inpas/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-inpas/README.html)