recipe bioconductor-inpas

InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data

Homepage

https://bioconductor.org/packages/3.10/bioc/html/InPAS.html

License

GPL (>= 2)

Recipe

/bioconductor-inpas/meta.yaml

Alternative polyadenylation (APA) is one of the important post-transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites and the differential usage of APA sites from RNA-Seq data. It leverages cleanUpdTSeq to fine tune identified APA sites by removing false sites due to internal-priming.

package bioconductor-inpas

(downloads) docker_bioconductor-inpas

Versions

1.18.0-0, 1.16.3-0, 1.14.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-inpas

and update with:

conda update bioconductor-inpas

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-inpas:<tag>

(see bioconductor-inpas/tags for valid values for <tag>)