recipe bioconductor-interactionset

Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/InteractionSet.html

License

GPL-3

Recipe

/bioconductor-interactionset/meta.yaml

Links

biotools: interactionset

package bioconductor-interactionset

Versions

1.10.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-0

Depends

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-matrix

• r-rcpp

Required By

• bioconductor-macpet

• bioconductor-hiccompare

• bioconductor-genomicinteractions

• bioconductor-cagefightr

• bioconductor-trackviewer

• bioconductor-sevenc

• bioconductor-diffhic

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-interactionset

and update with:

conda update bioconductor-interactionset

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-interactionset:<tag>

(see bioconductor-interactionset/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-interactionset/README.html)