- recipe bioconductor-interactionset
Base Classes for Storing Genomic Interaction Data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/InteractionSet.html
- License:
GPL-3
- Recipe:
- Links:
biotools: interactionset
Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.
- package bioconductor-interactionset¶
-
- Versions:
1.26.0-0
,1.22.0-2
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.26.0-0
,1.22.0-2
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-interactionset
and update with:
conda update bioconductor-interactionset
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-interactionset:<tag>
(see bioconductor-interactionset/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-interactionset/README.html)