recipe bioconductor-interactionset

Base Classes for Storing Genomic Interaction Data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/InteractionSet.html

License:

GPL-3

Recipe:

/bioconductor-interactionset/meta.yaml

Links:

biotools: interactionset

Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.

package bioconductor-interactionset

Versions:

1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0, 

1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=10.3.0

• r-base >=4.1,<4.2.0a0

• r-matrix

• r-rcpp

Required By:

• bioconductor-nullrangesdata

• bioconductor-diffhic

• bioconductor-chippeakanno

• bioconductor-genomicinteractions

• bioconductor-hiccompare

• bioconductor-nullranges

• bioconductor-macpet

• bioconductor-cagefightr

• bioconductor-sevenc

• bioconductor-hicdcplus

• bioconductor-trackviewer

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-interactionset

and update with:

conda update bioconductor-interactionset

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-interactionset:<tag>

(see bioconductor-interactionset/tags for valid values for <tag>)

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