recipe bioconductor-interactivedisplay

Package for enabling powerful shiny web displays of Bioconductor objects

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/interactiveDisplay.html

License:

Artistic-2.0

Recipe:

/bioconductor-interactivedisplay/meta.yaml

Links:

biotools: interactivedisplay, doi: 10.1038/nmeth.3252

The interactiveDisplay package contains the methods needed to generate interactive Shiny based display methods for Bioconductor objects.

package bioconductor-interactivedisplay

versions:

1.38.0-0,  1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.18.0-0,  1.16.0-0

depends bioconductor-annotationdbi:

>=1.62.0,<1.63.0

depends bioconductor-biocgenerics:

>=0.46.0,<0.47.0

depends bioconductor-category:

>=2.66.0,<2.67.0

depends bioconductor-interactivedisplaybase:

>=1.38.0,<1.39.0

depends r-base:

>=4.3,<4.4.0a0

depends r-biocmanager:

depends r-ggplot2:

depends r-gridsvg:

depends r-plyr:

depends r-rcolorbrewer:

depends r-reshape2:

depends r-shiny:

depends r-xml:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-interactivedisplay

and update with::

   mamba update bioconductor-interactivedisplay

To create a new environment, run:

mamba create --name myenvname bioconductor-interactivedisplay

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-interactivedisplay:<tag>

(see `bioconductor-interactivedisplay/tags`_ for valid values for ``<tag>``)

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Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-interactivedisplay/README.html)