recipe bioconductor-intercellar

InterCellar: an R-Shiny app for interactive analysis and exploration of cell-cell communication in single-cell transcriptomics

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/InterCellar.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-intercellar/meta.yaml

InterCellar is implemented as an R/Bioconductor Package containing a Shiny app that allows users to interactively analyze cell-cell communication from scRNA-seq data. Starting from precomputed ligand-receptor interactions, InterCellar provides filtering options, annotations and multiple visualizations to explore clusters, genes and functions. Finally, based on functional annotation from Gene Ontology and pathway databases, InterCellar implements data-driven analyses to investigate cell-cell communication in one or multiple conditions.

package bioconductor-intercellar

(downloads) docker_bioconductor-intercellar

Versions:

2.4.0-02.0.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-intercellar

and update with:

conda update bioconductor-intercellar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-intercellar:<tag>

(see bioconductor-intercellar/tags for valid values for <tag>)

Download stats